PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_8.51
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family FAR1
Protein Properties Length: 400aa    MW: 45458.8 Da    PI: 9.9513
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_8.51genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.57.3e-2611101190
                        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkl 81 
                                 +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++   ++++    + + tr gC a+l++ +++ +kw+vtk+
  evm.model.supercontig_8.51  11 EFYIAYGRRIGFTVRIHHNRRSRINNVVIGQDFVCSKEGFREKKYMYRKDR-VlpPPPITREGCPAMLRIALRDGAKWVVTKF 92 
                                 6******************************************99983333.244899************************* PP

                        FAR1  82 eleHnHela 90 
                                 ++eHnH+l 
  evm.model.supercontig_8.51  93 VKEHNHTLI 101
                                 ******996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.8E-2311101IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MEFRSRDAAQ EFYIAYGRRI GFTVRIHHNR RSRINNVVIG QDFVCSKEGF REKKYMYRKD  60
RVLPPPPITR EGCPAMLRIA LRDGAKWVVT KFVKEHNHTL ISPGEVPWRG SAKDLISEDG  120
KDRRIRELTN ELHSERQRCK RRCAVYQGQL RAVLKFVGEH TDQLSIRVND IVKNVKELED  180
DRPLYLAQIK QSIKLTRRSK QAALMSDGSQ PVDEANQEPQ QLEKRNQLTR GLEIYRNALD  240
DIVNANGLFT IAVFVGLSLA QPGQRSLEER HECDADMTLG KQLVVSEVIA FACYLLSSLV  300
AKALKIHLSV CTPEQYEQFK YKVIRGSLLV LSVWSSIFGC IFLTISMVHV IQIRVGKLSC  360
GSVYTLRSAG TLIALVALAL FIYITFTMHA VYVSMNGRT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135140RQRCKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16529711
Representative plantOGRP8956514
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.12e-32FAR1 family protein